RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g39860.1 View Network Show in Genome Browser |
| Other Names | Os12g0589100 |
| Description | phosphoribosyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 24636908-24639850 Nucleotide Length: 723 |
| Protein-coding | LOC_Os12g39860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g30830 LOC_Os01g55820 LOC_Os05g35580 LOC_Os05g08950 LOC_Os08g23730 LOC_Os01g72240 LOC_Os01g65260 LOC_Os05g38170 LOC_Os02g48390 LOC_Os02g03540 LOC_Os01g56620 More.. |
| Downstream Genes | LOC_Os12g40130 LOC_Os12g42370 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | P1-PWY SALVADEHYPOX-PWY PWY-5043 P121-PWY PWY-6605 PWY-6610 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g39860.1 |
| Rice Genome Annotation | LOC_Os12g39860.1 |
| Ricechip | LOC_Os12g39860.1 |
| KEGG | osa:4352670 dosa:Os12t0589100-01 |
| Entrez-Gene | 4352670 |