RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os12g40730.1 View Network Show in Genome Browser
Other Names	Os12g0599550,Os12g0599400
Description	helix-loop-helix DNA-binding domain containing protein, expressed
Gene Attributes	Chromosome: Chr12 CDS Coordinates (5'-3'): 25214547-25225410 Nucleotide Length: 996
Protein-coding	LOC_Os12g40730

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009605	response to external stimulus	Biological Process	IEA
GO:0009605	response to external stimulus	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003674	molecular_function	Molecular Function	IEA
GO:0003674	molecular_function	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os07g48780 LOC_Os05g41210 LOC_Os03g20370 LOC_Os01g16240 LOC_Os05g34540 LOC_Os05g23860 LOC_Os07g16970 LOC_Os03g16900 LOC_Os01g17190 LOC_Os10g38660 LOC_Os10g38670 More..

Database Links
Gramene	LOC_Os12g40730.1
Rice Genome Annotation	LOC_Os12g40730.1
Ricechip	LOC_Os12g40730.1
KEGG	osa:9267151 dosa:Os12t0599550-00 dosa:Os12t0599400-00
Entrez-Gene	9267151