RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g40830.2 View Network Show in Genome Browser |
| Other Names | Os12g0600400 |
| Description | kinase, pfkB family, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 25271530-25277012 Nucleotide Length: 930 |
| Protein-coding | LOC_Os12g40830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47550 LOC_Os02g41590 LOC_Os04g43750 LOC_Os08g45180 LOC_Os10g32830 LOC_Os07g07240 LOC_Os05g08960 LOC_Os03g57790 LOC_Os09g38777 LOC_Os01g40250 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00750 rn01100 |
| Metacyc Pathways | PLPSAL-PWY PYRIDOXAMINEANABOLISM |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g40830.2 |
| Rice Genome Annotation | LOC_Os12g40830.2 |
| Ricechip | LOC_Os12g40830.2 |
| KEGG | osa:4352717 dosa:Os12t0600400-01 |
| Entrez-Gene | 4352717 |