RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g40890.1 View Network Show in Genome Browser |
| Other Names | Os12g0601300 |
| Description | OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 25310812-25316229 Nucleotide Length: 834 |
| Protein-coding | LOC_Os12g40890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g09930 LOC_Os02g16500 LOC_Os06g09660 LOC_Os10g40730 LOC_Os03g02240 LOC_Os02g51860 LOC_Os01g59150 LOC_Os05g04820 LOC_Os11g44810 LOC_Os03g64320 LOC_Os03g03570 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR408-5p osa-miR415 osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g40890.1 |
| Rice Genome Annotation | LOC_Os12g40890.1 |
| Ricechip | LOC_Os12g40890.1 |
| KEGG | osa:4352721 dosa:Os12t0601300-01 |
| Entrez-Gene | 4352721 |