RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g40900.1 View Network Show in Genome Browser |
| Other Names | Os12g0601400 |
| Description | OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 25325549-25327567 Nucleotide Length: 594 |
| Protein-coding | LOC_Os12g40900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g43410 LOC_Os06g09660 LOC_Os05g05800 LOC_Os03g19590 LOC_Os05g26820 LOC_Os07g47990 LOC_Os03g17210 LOC_Os02g43660 LOC_Os11g47820 LOC_Os01g55080 LOC_Os03g53150 More.. |
| Downstream Genes | LOC_Os12g43363 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 osa-miR1424 osa-miR3979-5p |
| Reference | |
|---|---|
| PubMed | 16623891 16200395 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g40900.1 |
| Rice Genome Annotation | LOC_Os12g40900.1 |
| Ricechip | LOC_Os12g40900.1 |
| KEGG | osa:4352722 dosa:Os12t0601400-01 |
| Entrez-Gene | 4352722 |