RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g41220.1 View Network Show in Genome Browser |
| Other Names | Os12g0605400 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 25558815-25561100 Nucleotide Length: 441 |
| Protein-coding | LOC_Os12g41220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48280 LOC_Os01g70140 LOC_Os12g36194 LOC_Os09g38030 LOC_Os11g32900 LOC_Os04g02820 LOC_Os02g32030 LOC_Os06g49480 LOC_Os06g07630 LOC_Os03g36930 LOC_Os10g11260 More.. |
| Downstream Genes | LOC_Os12g44000 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5338 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g41220.1 |
| Rice Genome Annotation | LOC_Os12g41220.1 |
| Ricechip | LOC_Os12g41220.1 |
| KEGG | osa:4352739 dosa:Os12t0605400-01 |
| Entrez-Gene | 4352739 |