RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g41880.2 View Network Show in Genome Browser |
| Other Names | Os12g0613000 |
| Description | nuclear transcription factor Y subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 25953540-25957364 Nucleotide Length: 654 |
| Protein-coding | LOC_Os12g41880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07190 LOC_Os09g30310 LOC_Os08g38780 LOC_Os05g38820 LOC_Os01g61810 LOC_Os06g45640 LOC_Os02g07450 LOC_Os03g14669 LOC_Os07g41580 LOC_Os05g49780 LOC_Os08g07740 More.. |
| Reference | |
|---|---|
| PubMed | 18193457 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g41880.2 |
| Rice Genome Annotation | LOC_Os12g41880.2 |
| Ricechip | LOC_Os12g41880.2 |
| KEGG | osa:4352778 dosa:Os12t0613000-01 |
| Entrez-Gene | 4352778 |