RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g42550.1 View Network Show in Genome Browser |
| Other Names | Os12g0620400 |
| Description | methyl-CpG binding domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 26425320-26430083 Nucleotide Length: 912 |
| Protein-coding | LOC_Os12g42550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g32090 LOC_Os05g33550 LOC_Os02g09920 LOC_Os09g25090 LOC_Os10g40580 LOC_Os12g01449 LOC_Os06g03540 LOC_Os10g08474 LOC_Os10g08319 LOC_Os03g14400 LOC_Os11g01439 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2097-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g42550.1 |
| Rice Genome Annotation | LOC_Os12g42550.1 |
| Ricechip | LOC_Os12g42550.1 |
| KEGG | osa:4352815 dosa:Os12t0620400-01 |
| Entrez-Gene | 4352815 |