RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g42760.1 View Network Show in Genome Browser |
| Other Names | Os12g0622500 |
| Description | type IIB DNA topoisomerase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 26577956-26581040 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os12g42760 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g10770 LOC_Os02g48830 LOC_Os03g58480 LOC_Os02g47420 LOC_Os04g41820 LOC_Os01g73790 LOC_Os02g33850 LOC_Os07g31840 LOC_Os09g31180 LOC_Os10g27190 LOC_Os03g01900 More.. |
| Downstream Genes | LOC_Os12g43370 |
| Reference | |
|---|---|
| PubMed | 21637817 22248237 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g42760.1 |
| Rice Genome Annotation | LOC_Os12g42760.1 |
| Ricechip | LOC_Os12g42760.1 |
| KEGG | osa:4352826 dosa:Os12t0622500-01 |
| Entrez-Gene | 4352826 |