RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g42870.1 View Network Show in Genome Browser |
| Other Names | Os12g0623800 |
| Description | Mur ligase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 26635697-26640549 Nucleotide Length: 1533 |
| Protein-coding | LOC_Os12g42870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58320 LOC_Os03g58290 LOC_Os03g58300 LOC_Os07g08430 LOC_Os02g16630 LOC_Os08g04180 LOC_Os07g06940 LOC_Os03g21740 LOC_Os03g58260 LOC_Os07g29410 LOC_Os03g48850 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00790 |
| Metacyc Pathways | PWY-2161B PWY-3742 1CMET2-PWY PWY-3841 PWY-2161 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g42870.1 |
| Rice Genome Annotation | LOC_Os12g42870.1 |
| Ricechip | LOC_Os12g42870.1 |
| KEGG | dosa:Os12t0623800-01 |