RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g42884.2 View Network Show in Genome Browser |
| Other Names | Os12g0624000 |
| Description | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 26657277-26662994 Nucleotide Length: 2301 |
| Protein-coding | LOC_Os12g42884 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os12g42876 LOC_Os04g58580 LOC_Os01g18860 LOC_Os05g04510 LOC_Os10g22380 LOC_Os08g09200 LOC_Os11g43900 LOC_Os06g19680 LOC_Os01g62230 LOC_Os01g22010 LOC_Os11g26850 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 rn00450 |
| Metacyc Pathways | PWY-702 HOMOSER-METSYN-PWY PWY-5041 SAM-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g42884.2 |
| Rice Genome Annotation | LOC_Os12g42884.2 |
| Ricechip | LOC_Os12g42884.2 |
| KEGG | osa:4352833 dosa:Os12t0624000-01 |
| Entrez-Gene | 4352833 |