RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g42980.1 View Network Show in Genome Browser |
| Other Names | Os12g0625000 |
| Description | cysteine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 26698649-26703351 Nucleotide Length: 1227 |
| Protein-coding | LOC_Os12g42980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g07960 LOC_Os06g07860 LOC_Os08g04180 LOC_Os04g02820 LOC_Os04g46930 LOC_Os02g32030 LOC_Os03g50510 LOC_Os06g42560 LOC_Os11g26850 LOC_Os01g46980 LOC_Os05g47640 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00920 rn01100 rn01120 |
| Metacyc Pathways | CYSTSYN-PWY HOMOCYSDEGR-PWY PWY-801 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g42980.1 |
| Rice Genome Annotation | LOC_Os12g42980.1 |
| Ricechip | LOC_Os12g42980.1 |
| KEGG | osa:4352839 dosa:Os12t0625000-01 |
| Entrez-Gene | 4352839 |