RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g44310.1 View Network Show in Genome Browser |
| Other Names | Os12g0640600 |
| Description | carotenoid cleavage dioxygenase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 27464735-27472036 Nucleotide Length: 1644 |
| Protein-coding | LOC_Os12g44310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05310 LOC_Os03g12030 LOC_Os12g02120 LOC_Os11g02180 LOC_Os03g22770 LOC_Os05g49380 LOC_Os04g33940 |
| Downstream Genes | LOC_Os12g44370 |
| Reference | |
|---|---|
| PubMed | 20549230 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g44310.1 |
| Rice Genome Annotation | LOC_Os12g44310.1 |
| Ricechip | LOC_Os12g44310.1 |
| KEGG | osa:4352923 dosa:Os12t0640600-01 |
| Entrez-Gene | 4352923 |