EVERY
CELL
MATTERS
CELL
MATTERS
Quick Access
Data Browse
Quick access to studies.
Details
Gene Search
Search gene expression in different cell types and tissues.
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Cell Mapping
Single-cell mapping pipeline for classification of cell types.
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Ageing-Associated
Quick access to ageing-associated genes & TFs.
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Cell Atlases by Microwell-seq & CH-seq
Homo sapiens
Microwell-seq
599,926 cells
Human Cell Landscape
A single-cell RNA sequencing landscape to determine the cell type composition of major human organs (>700,000 single cells from >50 human tissues and cultures).
Data & Details
Mus musculus
Microwell-seq
MCDAA
1,120,794 cells
Mouse Cell Atlas
A single-cell RNA sequencing atlas to determine the cell type composition of major mouse organs and gene expression across 10 stages of life span (>1,000,000 single cells from >20 mouse tissues).
Data & Details
Mus musculus
Microwell-seq
KO Landscape (Xbp1)
93,246 cells
KO Landscape (Xbp1)
A single-cell RNA sequencing atlas to determine the cell type composition of mouse Xbp1 KO embryos and gene expression (>90,000 single cells from 9 mouse embryos).
Data & Details
Danio rerio
Microwell-seq
ZCDL
1,035,602 cells
Zebarfish Cell Landscape
A single-cell RNA sequencing landscape to determine the cell type composition of major zebrafish organs and gene expression across 3 stages of life span (>900,000 single cells from >10 zebrafish tissues).
Data & Details
Drosophila melanogaster
Microwell-seq
439,201 cells
Drosophila Cell Atlas
A single-cell RNA sequencing atlas to determine the cell type composition of drosophila and gene expression across 7 stages of life span.
Data & Details
Ambystoma mexicanum
CH-RNA-seq
1,072,427 cells
Axolotl Cell Atlas
A single-cell RNA sequencing atlas including adult neotenic axolotl, metamorphosed axolotl multi-organ cell type composition and gene expression. A single-cell RNA sequencing sequencing landscape of larval stage axolotl whole organism cell types and gene expression (D30 and D70 postfertilization).
Data & Details
Xenopus laevis
Microwell-seq
>500,000 cells
Xenopus Cell Landscape
A single-cell RNA sequencing atlas to determine the cell type composition of Xenopus and gene expression >16 Xenopus tissues .
Data & Details
Eisenia andrei
Microwell-seq
95,020 cells
Earthworm Cell Landscape
A single-cell RNA sequencing landscape to determine the cell type composition of earthworm and gene expression at adult.
Data & Details
Resources for other species
Macaca fascicularis
scRNA-seq
1,144,706 cells
Monkey cell atlas
A single-cell atlas of the cynomolgus monkey (>1 million cells and nuclei from 45 tissues).
Data & Details
Macaca fascicularis
scRNA-seq
174,233 cells
Reference map of cynomolgus monkeys
A reference single-cell regulomic and transcriptomic map of cynomolgus monkeys (16 tissues and organs).
Data & Details
Rattus norvegicus
scRNA-seq
166,111 cells
Rat cell atlas
A single-cell atlas across various rat tissues undergoing aging and caloric restriction (>160,000 cells, 9 tissues).
Data & Details
Ciona intestinalis
10x Genomics
90,579 cells
Sea squirt cell atlas
A single-cell atlas span development from the onset of gastrulation to swimming tadpoles in Ciona intestinalis (>90,000 cells).
Data & Details
Caenorhabditis elegans
sci-RNA-seq
~49,000 cells
Worm cell atlas
A single-cell atlas of the nematode Caenorhabditis elegans at the L2 larval stage (~49,000 cells).
Data & Details
Schmidtea mediterranea
Drop-seq
66,783 cells
Planarian cell atlas
A single-cell atlas of the adult planarians (~50,000 cells).
Data & Details
Nematostella vectensis
MARS-seq
11,888 cells
Starlet sea anemone cell atlas
A single-cell atlas of the Adult Nematostella vectensis (>10,000 cells).
Data & Details
Hydra vulgaris
Drop-seq
25,052 cells
Hydra cell atlas
A single-cell atlas of the Adult Hydra vulgaris (~25,000 cells).
Data & Details
Spongilla lacustris
10x Genomics
10,106 cells
Sponge cell atlas
A single-cell atlas of Spongilla lacustris (~10,000 cells).
Data & Details
Citation
Renying Wang, Peijing Zhang, Jingjing Wang, Lifeng Ma, Weigao E, Shengbao Suo, Mengmeng Jiang, Jiaqi Li, Haide Chen, Huiyu Sun, Lijiang Fei, Ziming Zhou, Yincong Zhou, Yao Chen, Weiqi Zhang, Xinru Wang, Yuqing Mei, Zhongyi Sun, Chengxuan Yu, Jikai Shao, Yuting Fu, Yanyu Xiao, Fang Ye, Xing Fang, Hanyu Wu, Qile Guo, Xiunan Fang, Xia Li, Xianzhi Gao, Dan Wang, Peng-Fei Xu, Rui Zeng, Gang Xu, Lijun Zhu, Lie Wang, Jing Qu, Dan Zhang, Hongwei Ouyang, He Huang, Ming Chen, Shyh-Chang NG, Guang-Hui Liu, Guo-Cheng Yuan, Guoji Guo and Xiaoping Han. Construction of a cross-species cell landscape at single-cell level. Nucleic Acids Research, 2022. DOI: 10.1093/nar/gkac633.
News
2022.10.04 Reference map of cynomolgus monkeys added.
2022.08.05 Article online.
2022.01.18 Cell Landscape released.