C3-B3 2015

C3-B3'2015
2015年“生物大数据“国际暑期研习班及学术研讨会
2015 International Workshop and Summer School on "Biological Big Bytes"

a satellite meeting of the international workshop/summer school on Crops, Chips & Comp
September 6^th to 11^th, 2015, 2015
Guangxi Teachers Education University, Nanning, China

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Preliminary Programme （Guide^New）

Sunday 6^th Sep 2015

Registration
Guangxi Teachers Education University / Guangxi Litai International Hotel
17:30~ Dinner

Monday 7^th Sep 2015

Registration
Meeting room, Administration Building, Guangxi Teachers Education University
Section 1 (Lectures)
08:30~09:45 Introduction & Lecture 1
An overview of what needs to be done at the school and the expected work load on each day.
Team grouping
history of data science and technology
Lecturer: Andrew Harrison, Hugh Shanahan, Adam Carter
10:00~12:00 Lecture 2
Bioinformatics – from sequence to function
Lecturer: Shoba Ranganathan
12:00~13:30 Lunch
Section 2 (Practical)
14:30~17:30 Practice 1
Automating tasks with the Unix shell.
Lecturer: Mitchell Stanton-Cook, Yuxi Luo
18:00~ Dinner

Tuesday 8^th Sep 2015

Section 3 (Lectures)

08:30~9:45 Lecture 3
Models for Processing Big Data - Moving Compute to the Data - Workflows - Data Intensive Compute Architectures Models for Processing Big Data - MapReduce (includes practical session)
Lecturer: Adam Carter
10:00~12:00 Lecture 4
Advanced data mining algorithms for bioinformatics problems
Lecturer: Jinyan Li
12:00~13:30 Lunch
Section 4 ( Lecture & Practical)
14:30~17:30 Practice 2
Building programs with Python 1.
Lecturer:Mitchell Stanton-Cook, Yuxi Luo
18:00~ Dinner

Wednesday 9^th Sep 2015

Workshop Day

(Meeting room, Libarary of Guangxi Teachers Education University)

Section 5 (Chair: Chang-An Yuan, Qingfeng Chen, Ming Chen, Andrew Harrison)

08:30~09:10
Opening Ceremony
Speaker: President Yuan
09:10~9:40
Speaker 1: Andrew Harrison
Title: The history and design of the CODATA-RDA schools on Research Data Science
09:40~10:10
Speaker 2: De-shuang Huang
Title: Prediction, De-noising and Modeling of PPI Networks Based on Machine Learning Techniques
10:10~10:30
Coffee/Tea break

Section 6 (Chair: Qingfeng Chen)

10:30~10:55
Speaker 3: Jinyan Li
Title: Structure bioinformatics and graph theory
10:55~11:20
Speaker 4: Hugh Shanahan
Title: Annotation of sequencing protocols for NGS data in the SRA - a cause for concern
11:20~11:45
Speaker 5: Mitchell Stanton-Cook
Title: Doing bioinformatics pipelines better
11:45~12:10
Speaker 6: Hong Li / Ziding Zhang
Title: Competition-cooperation relationship networks (CCRNs) characterize the competition and cooperation between proteins
12:30~13:30 Lunch

Section 7 (Chair: Adam Carter)
14:30~14:55
Speaker 7: Yuxi Luo
Title: Experimental study of speed up techniques for sparse autoencoder and my workflow
14:55~15:20
Speaker 8: Ming Chen
Title: Rice interactome
15:20~15:45
Speaker 9: Youhuang Bai
Title: Genomics analysis for aflatoxin biosynthesis in Aspergillus flavus
15:45~16:10
Speaker 10: Jian Jin
Title: Genomic analysis of Arabidopsis flower development gene regulatory network
16:10~16:30
Coffee/Tea break

Section 8 (Chair: Youhuang Bai)

16:30~16:55
Speaker 11: Adam Carter
Title: Model Driven Preservation - The PERICLES project
16:55~17:20
Speaker 12: Zeeshan Gillani / Ming Chen
Title: large scale image high throughput phenotyping in Plants
17:20~17:45
Speaker 13: Liang Zhao
Title: MapReduce-based approach for next-generation sequencing data
18:00~20:00 Dinner & Discussion

Thursday 10^th Sep 2015

Section 7 (Practical)

09:00~11:30 Practice 3
Building programs with Python 2
Lecturer: Mitchell Stanton-Cook, Yuxi Luo
12:00~13:30 Lunch
Section 8 (Practical)
14:30~17:30 Practice 4
Version control with Git.
Lecturer: Mitchell Stanton-Cook, Yuxi Luo
18:00~ Dinner

Friday 11^th Sep 2015

9:30~11:40 Close session & Awards ceremony
Science in the UK, Australia and China, and moving among countries; career structures in these countries. We expect to recruit European students who may be considering spending part of their careers in China and we hope some of the Chinese students similarly look to spend part of their careers overseas.
12:00~ Lunch & Farewell.