Programme -- CIB 2009

	CIB 2009 2009 International Workshop on Computational and Integrative Biology a satellite meeting of the International Conference of Integrative Biology September 18^th to 20^th, 2009 Hangzhou, China

10:00~10:45 Transcriptomic evidence for neutral evolution
Neil Graham (University of Nottingham, UK)
10:45~11:30 Can in silico evolution outperform natural evolution? Hidden opportunities to increase plant productivity
Xinguang Zhu (CAS, China)
11:30~11:45 Photograph
12:00~13:30 Lunch

14:00~14:30 Models of SIGIRR inhibiting the toll-like receptor TLR4 signaling pathway
Tiandi Wei (Ludwig-Maximilians-Universität München,Germany)
14:30~15:00 Integration of -omics data and networks for biomedical research
Christian Klukas (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
15:00~15:30 Predicting the oncogenic pathway activities of individual samples from microarray gene expression profiles
Gaofeng Huang (University of Oxford, UK)
15:30~15:45 Tea break
15:45~16:15 Reconstruction of biological networks based on life science data integration
B. Kormeier (Bielefeld University, Germany)
16:15~16:45 Simulation-based model checking approach for cell fate specification - using cell illustrator online: a computational platform for systems biology
Chen Li (University of Tokyo, Japan)
16:45~17:15 Towards identification of human disease phenotype-genotype association via a network-module based method
Qiang Jiang (Shanghai Institutes for Biological Sciences, China)
18:00~20:00 Dinner

09:00~09:30 An algorithm to produce conditional equation for smooth signal flows in the petri net model of a signaling pathway
Yoshimasa Miwa (Yamaguchi University, Japan)
09:30~10:00 Gene identification and the regulation of phenylpropanoid pathways in plants
Jie Luo (Huazhong Agricultural University, China)
10:00~10:15 Tea break
10:15~10:45 Genome-wide survey of rice microRNAs and miroRNA-target pairs in the root of a novel auxin-resistant mutant
Yijun Meng (Zhejiang University, China)
10:45~11:15 Using surveys of Affymetrix GeneChips to study antisense expression
Sanchez Graillet, Olivia (University of Essex, UK)
11:15~11:45 Developing a human transcriptome array for clinical genomics
Junhee Seok (Stanford University, USA)
12:00~13:30 Lunch

14:00~14:30 Highlight of genomics: Discovering novel non-coding RNA genes
Zhi John Lu (Yale Univeristy, USA)
14:30~15:00 Evaluation of protein phosphorylation site predictors
Huaqin He (Fujiang agriculture and forestry university, China)
15:00~15:30 Identifying the impact of G-Quadruplexes on Affymetrix Exon Arrays using Cloud Computing
Farhat N. Memon (University of Essex, UK)
15:30~15:45 Tea break
15:45~16:15 Centroid extensions of de novo motif detection algorithms
Hendrik Mehlhorn (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
16:15~16:45 Simulation of the phase decision processes of clock gene expressions by promoter transcriptional regulations
Kenji Miyamoto (Yamaguchi University, Japan)
16:45~18:00 Demo/Poster

09:00~09:30 Structural bioinformatics, TCM Databases, and personalized drug design
Dongqing Wei (Shanghai Jiaotong University, China)
09:30~10:00 The LAILAPS search engine: Relevance ranking in life science databases
Matthias Lange (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
10:00~10:15 Tea break
10:15~10:45 LIMS lite: a system for management and search of primary lab data
Matthias Klapperstück (Leibniz Institute of Plant Genetics and Crop Plant Research, Germany)
10:45~11:15 RiboNucleic acid tertiary structure comparison using graph theory
Zain-ul-Abdin Khuhro (Univerisity of Essex, UK)
11:15~11:45 Proteomics based pattern analysis in clinical practice: a robust analysis strategy
Thomas Wolf (German Cancer Research Center, Germany)
11:45~12:00 CIB close
12:00~13:30 Lunch