合作成果（Achievements）
Publications:
Md. Matiur Rahaman, Dijun Chen, Zeeshan Gillani, Christian Klukas, Ming Chen* (2015) Advanced phenotyping and phenotype data analysis for the study of plant growth and development. Frontiers in Plant Science, 6: 619.
Dijun Chen, Liang-Yu Fu, Zhao Zhang, Guoliang Li, Hang Zhang, Li Jiang, Andrew Harrison, Hugh Shanahan, Christian Klukas, Hong-Yu Zhang, Yijun Ruan*, Ling-ling Chen*, Ming Chen* (2014) Dissecting the chromatin interactome of microRNA genes. Nucleic Acids Research, 42(5):3028-3043.
Dijun Chen, Kerstin Neumann, Swetlana Friedel, Benjamin Kilian, Ming Chen, Thomas Altmann, Christian Klukas (2014) Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis. Plant Cell, doi: 10.1105/tpc.114.129601.
Ming Chen, Ralf Hofestädt (2014) Open Problems in Petri Net Modeling and Simulation of Biology Systems. Information Technology, 56(2): 76-81.
Björn Sommer, Ming Chen (2014) A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling. Sommer, Björn (Ed.): Proceedings of the CELLmicrocosmos neXt workshop, Bielefeld, doi: 10.2390/biecoll-next2014-9.
Ming Chen, Ralf Hofestädt, Eds. (2014) Approaches in Integrative Bioinformatics. Towards the Virtual Cell. Springer, 2014. ISBN: 978-3-642-41280-6.
Ming Chen, Ralf Hofestädt (2014) Integrative Bioinformatis. In Approaches in Integrative Bioinformatics (Chen & Hofestädt, ed.), pp. 3-19.
Dijun Chen, Ming Chen, Thomas Altman, Christian Klukas (2014) Bridging Genomics and Phenomics. In Approaches in Integrative Bioinformatics (Chen & Hofestädt, ed.), pp. 299-333.
Xiaoduo Lu, Dijun Chen, Dengfeng Shu, Zhao Zhang, Weixuan Wang, Christian Klukas, Lingling Chen, Yunliu Fan, Ming Chen*, Chunyi Zhang* (2013) The differential transcription network between embryo and endosperm in the early developing maize seed.Plant Physiology, 162(1):440-455.
Donglin Huang, Yiling Huang, Youhuang Bai, Dijun Chen, Ralf Hofestädt, Christian Klukas, Ming Chen* (2011) MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinformatics, 27(23): 3321-3322.
Ming Chen, Minjie Hu, Ralf Hofestädt (2011) A Systematic Petri Net Approach for Multiple Scale Modeling and Simulation of Biochemical Processes. Applied Biochemistry and Biotechnology, 164(3): 338-352.
Ming Chen, Sridhar Hariharaputran, Ralf Hofestädt, Benjamin Kormeier, Sarah Spangardt (2011) Petri Net Models for the Semi-automatic Construction of Large Scale Biological Networks. Natural Computing, 10(3): 1077-1097.
Ming Chen et al. (2011) Two articles selected. In Biological Petri Nets (Edgar Wingender ed.), ISBN 978-1-60750-703-1.
Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestaedt, Ming Chen* (2010) PBSK Browser: navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats. 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops. pp: 13-17.
Sebastian Janowski, Benjamin Kormeier, Thoralf Töpel, Klaus Hippe, Ralf Hofestädt, Nils Willassen, Rafael Friesen, Sebastian Rubert, Daniela Borck, Peik Haugen and Ming Chen (2010) Modeling of cell-to-cell communication processes with Petri nets using the example of quorum sensing. In Silico Biology, 10, 0003.
陈铭 (2010) 2009计算与整合生物学国际学术会议暨基因芯片、计算机和作物国际暑期研习班. 国际学术动态, 171(6): 48-49.
Ming Chen, Ralf Hofestaedt (2006) Prediction and Alignment of Metabolic Pathways. In Bioinformatics of Genome Regulation and Structure II (Nikolay Kolchanov ed.), pp.355-365.
Ming Chen, Ralf Hofestaedt (2006) A Medical Bioinformatics Approach for Metabolic Disorders: Biomedical Data Prediction, Modeling and Systematic Analysis. Journal of Biomedical Informatics, 39(2): 147-159. (首届中国百篇最具影响优秀国际论文)
Ming Chen, Ralf Hofestädt (2005) Integrative Analysis of Metabolic Disorders by Means of Medical Bioinformatics. 27th Annual International Conference of the IEEE Engineering In Medicine and Biology Society (EMBS), 2005, Sep.1-4, Shanghai, China. pp. 228-231.