Download
The references are divided into 5 groups (Ectoderm, Endoderm, Mesoderm, pre-organogenesis and extraembryonic tissues) and two species (Homo sapiens and Mus musculus).
Gene expression matrix and marker genes for each cell type in each dataset are used to establish the pre-trained model.
The sub_sct_meta containing expression matrix and metadata, the marker genes list of each cell type and the pretrained model for each group can be downloaded here.
Links to the rawdata of each article
Human
Number | Articles | Links |
01 | 2016_Cell_Manno |
Link |
02 | 2018_Nature_Zhong |
Link |
03 | 2013_Nat Struct Mol Biol_Yan |
Link |
04 | 2019_Nature_Zhou |
Link |
05 | 2019_PLoS Biol_Hu |
Link |
06 | 2016_Cell_Petropoulos |
Link |
07 | 2015_Development_Blakeley |
Link |
08 | 2021_Nature_Tyser |
Link |
09 | 2021_Nat Neurosci_Eze |
Link |
10 | 2022_Science_Tabula |
Link |
11 | 2019_PLoS Biol_Hochane |
Link |
12 | 2019_Science_Stewart |
Link |
13 | 2021_Cell_Corbett |
Link |
14 | 2020_Nature_Han |
Link |
15 | 2021_Cell Stem Cell_Wang |
Link |
16 | 2018_Nat Cell Biol_Gao |
Link |
17 | 2021_Nature_Elmentaite |
Link |
18 | 2019_Cell Rep_Cui |
Link |
19 | 2019_Development_GarcĂa |
Link |
20 | 2018_Nature_Tormo |
Link |
21 | 2022_Science_Suo |
Link |
22 | 2020_Science_Park |
Link |
23 | 2021_Science_Reynolds |
Link |
24 | 2021_Nature_Jardine |
Link |
25 | 2019_Nature_Popescu |
Link |
26 | 2021_Cell_Yu |
Link |
Mouse
Filename | Download |
01 | 2017_Cell Rep_Mohammed |
Link |
02 | 2019_Nature_Nowotschin |
Link |
03 | 2019_Cell Rep_Cheng |
Link |
04 | 2016_Nature_Scialdone |
Link |
05 | 2019_Nature_Sala |
Link |
06 | 2022_Nat Genet_Qiu |
Link |
07 | 2018_Genome Biol_Dong |
Link |
08 | 2019_Nature_Cao |
Link |
09 | 2016_Cell_Manno |
Link |
10 | 2021_Nature_Manno |
Link |
11 | 2018_Cell_Zeisel |
Link |
12 | 2019_Nature_Soysa |
Link |
13 | 2021_Nat Commun_Miao |
Link |
14 | 2017_Development_Adam |
Link |
15 | 2018_Nature_Tabula |
Link |
16 | 2018_Cell_Han |
Link |
17 | 2020_Cell Stem Cell_Joost |
Link |
18 | 2019_Neuron_Clark |
Link |
19 | 2018_Nature_Montoro |
Link |
20 | 2020_Nat Commun_Han |
Link |
21 | 2017_Elife_Posfai |
Link |
22 | 2020_Cell_Lotto |
Link |
23 | 2020_Elife_Marsh |
Link |
24 | 2020_Science_Park |
Link |