RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g13990.3 View Network Show in Genome Browser |
| Other Names | Os02g0234800 |
| Description | U2 small nuclear ribonucleoprotein A, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 7632580-7635244 Nucleotide Length: 486 |
| Protein-coding | LOC_Os02g13990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04480 LOC_Os02g05310 LOC_Os02g01250 LOC_Os02g01740 LOC_Os02g05410 LOC_Os01g72890 LOC_Os02g12570 LOC_Os02g02510 LOC_Os01g36570 LOC_Os01g15860 LOC_Os01g56550 More.. |
| Downstream Genes | LOC_Os02g58090 LOC_Os02g37430 LOC_Os03g13760 LOC_Os04g39444 LOC_Os11g43620 LOC_Os03g21990 LOC_Os03g50850 LOC_Os03g22570 LOC_Os10g35550 LOC_Os03g17010 LOC_Os03g18720 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g13990.3 |
| Rice Genome Annotation | LOC_Os02g13990.3 |
| Ricechip | LOC_Os02g13990.3 |
| KEGG | osa:4328823 dosa:Os02t0234800-01 |
| Entrez-Gene | 4328823 |