RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g53230.1 View Network Show in Genome Browser |
| Other Names | Os02g0772000 |
| Description | transcription elongation factor SPT5 homolog 1, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 32584567-32591372 Nucleotide Length: 3084 |
| Protein-coding | LOC_Os02g53230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02510 LOC_Os01g23590 LOC_Os01g04730 LOC_Os01g59140 LOC_Os01g08970 LOC_Os01g56550 LOC_Os01g64820 LOC_Os02g04050 LOC_Os01g72790 LOC_Os01g05420 LOC_Os01g32750 More.. |
| Downstream Genes | LOC_Os05g05860 LOC_Os07g43060 LOC_Os09g02284 LOC_Os03g44484 LOC_Os07g07610 LOC_Os05g33240 LOC_Os12g05430 LOC_Os05g08970 LOC_Os05g41510 LOC_Os03g01230 LOC_Os04g25550 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g53230.1 |
| Rice Genome Annotation | LOC_Os02g53230.1 |
| Ricechip | LOC_Os02g53230.1 |
| KEGG | osa:9267296 dosa:Os02t0772000-00 |
| Entrez-Gene | 9267296 |