RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os02g53680.1 View Network Show in Genome Browser
Other Names	Os02g0776800
Description	RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed
Gene Attributes	Chromosome: Chr2 CDS Coordinates (5'-3'): 32832832-32836481 Nucleotide Length: 1971
Protein-coding	LOC_Os02g53680

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0007049	cell cycle	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g42230 LOC_Os01g67250 LOC_Os02g46130 LOC_Os02g30800 LOC_Os01g06020 LOC_Os02g44500 LOC_Os02g20430 LOC_Os02g35100 LOC_Os01g36390 LOC_Os02g41470 LOC_Os01g27520 More..
Downstream Genes	LOC_Os05g46270 LOC_Os05g19270 LOC_Os09g24220 LOC_Os05g06840 LOC_Os04g49860 LOC_Os02g56130 LOC_Os05g48030 LOC_Os02g58220 LOC_Os11g40150 LOC_Os11g29380 LOC_Os11g03430 More..

miRNA Regulations
miRNAs	osa-miR1861a osa-miR1861o

Reference
PubMed	19812186

Database Links
Gramene	LOC_Os02g53680.1
Rice Genome Annotation	LOC_Os02g53680.1
Ricechip	LOC_Os02g53680.1
KEGG	osa:4330902 dosa:Os02t0776800-01
Entrez-Gene	4330902