RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04980.1 View Network Show in Genome Browser |
| Other Names | Os03g0143600 |
| Description | PHD-finger domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2409861-2413432 Nucleotide Length: 762 |
| Protein-coding | LOC_Os03g04980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g15220 LOC_Os01g14950 LOC_Os01g24060 LOC_Os01g73310 LOC_Os02g29464 LOC_Os02g25580 LOC_Os01g64630 LOC_Os01g11580 LOC_Os01g24950 LOC_Os01g51380 |
| Downstream Genes | LOC_Os05g46330 LOC_Os07g43360 LOC_Os09g11270 LOC_Os06g04580 LOC_Os04g01130 LOC_Os08g25130 LOC_Os11g34300 LOC_Os05g06350 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04980.1 |
| Rice Genome Annotation | LOC_Os03g04980.1 |
| Ricechip | LOC_Os03g04980.1 |
| KEGG | osa:4331591 dosa:Os03t0143600-01 |
| Entrez-Gene | 4331591 |