RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g38000.2 View Network Show in Genome Browser |
| Other Names | Os03g0577000 |
| Description | 40S ribosomal protein S3-1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 21097507-21100043 Nucleotide Length: 618 |
| Protein-coding | LOC_Os03g38000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14059 LOC_Os01g10820 LOC_Os01g49290 LOC_Os02g01560 LOC_Os01g25610 LOC_Os03g31090 LOC_Os02g01332 LOC_Os03g10340 LOC_Os02g30050 LOC_Os01g54870 LOC_Os03g04590 More.. |
| Downstream Genes | LOC_Os07g01870 LOC_Os05g30530 LOC_Os05g11710 LOC_Os09g31180 LOC_Os06g35730 LOC_Os03g54890 LOC_Os11g29190 LOC_Os04g51630 LOC_Os07g08660 LOC_Os03g58430 LOC_Os09g08430 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g38000.2 |
| Rice Genome Annotation | LOC_Os03g38000.2 |
| Ricechip | LOC_Os03g38000.2 |
| KEGG | osa:4333308 dosa:Os03t0577000-01 |
| Entrez-Gene | 4333308 |