RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g50090.1 View Network Show in Genome Browser |
| Other Names | Os03g0708600 |
| Description | transposon protein, putative, CACTA, En/Spm sub-class, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 28566996-28571307 Nucleotide Length: 2211 |
| Protein-coding | LOC_Os03g50090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| IEA | ||||
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01740 LOC_Os01g72890 LOC_Os02g39890 LOC_Os02g14780 LOC_Os03g13800 LOC_Os03g25980 LOC_Os01g43170 LOC_Os02g58090 LOC_Os02g12850 LOC_Os02g07070 LOC_Os02g04480 More.. |
| Downstream Genes | LOC_Os09g20590 LOC_Os10g35550 LOC_Os07g32430 LOC_Os05g24970 LOC_Os05g07050 LOC_Os07g47630 LOC_Os05g04850 LOC_Os09g39590 LOC_Os10g31900 LOC_Os10g06130 LOC_Os08g34480 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn00680 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g50090.1 |
| Rice Genome Annotation | LOC_Os03g50090.1 |
| Ricechip | LOC_Os03g50090.1 |
| KEGG | osa:4333866 dosa:Os03t0708600-01 |
| Entrez-Gene | 4333866 |