RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g60130.1 View Network Show in Genome Browser |
| Other Names | Os03g0815900 |
| Description | transcription elongation factor protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 34194882-34197992 Nucleotide Length: 1104 |
| Protein-coding | LOC_Os03g60130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g01230 LOC_Os01g59140 LOC_Os03g44484 LOC_Os01g34614 LOC_Os02g02510 LOC_Os01g08970 LOC_Os01g56550 LOC_Os02g53230 LOC_Os01g05420 LOC_Os02g58220 LOC_Os02g56130 More.. |
| Downstream Genes | LOC_Os05g05860 LOC_Os12g37370 LOC_Os09g02284 LOC_Os07g07610 LOC_Os10g28040 LOC_Os05g32430 LOC_Os07g43060 LOC_Os05g43450 LOC_Os10g10990 LOC_Os05g33240 LOC_Os05g08970 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g60130.1 |
| Rice Genome Annotation | LOC_Os03g60130.1 |
| Ricechip | LOC_Os03g60130.1 |
| KEGG | osa:4334559 dosa:Os03t0815900-01 |
| Entrez-Gene | 4334559 |