RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g31950.1 View Network Show in Genome Browser |
| Other Names | Os04g0388900 |
| Description | LSM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19134251-19139588 Nucleotide Length: 294 |
| Protein-coding | LOC_Os04g31950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g64690 LOC_Os01g15310 LOC_Os02g01250 LOC_Os03g13760 LOC_Os02g01740 LOC_Os02g03440 LOC_Os03g61640 LOC_Os03g53220 LOC_Os01g15860 LOC_Os02g42860 LOC_Os02g37430 More.. |
| Downstream Genes | LOC_Os04g36810 LOC_Os05g32310 LOC_Os08g08040 LOC_Os05g24970 LOC_Os07g04850 LOC_Os05g51650 LOC_Os09g07500 LOC_Os10g35550 LOC_Os08g05530 LOC_Os11g43620 LOC_Os05g07050 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g31950.1 |
| Rice Genome Annotation | LOC_Os04g31950.1 |
| Ricechip | LOC_Os04g31950.1 |
| KEGG | osa:4335668 dosa:Os04t0388900-01 |
| Entrez-Gene | 4335668 |