RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g46450.1 View Network Show in Genome Browser |
| Other Names | Os04g0550400 |
| Description | zinc finger, C3HC4 type domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 27551358-27560074 Nucleotide Length: 2655 |
| Protein-coding | LOC_Os04g46450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g57790 LOC_Os03g46770 LOC_Os03g19059 LOC_Os03g05570 LOC_Os02g47870 LOC_Os02g31150 LOC_Os04g09800 LOC_Os04g10750 LOC_Os03g22570 LOC_Os01g57110 LOC_Os04g31390 More.. |
| Downstream Genes | LOC_Os07g07240 LOC_Os05g08960 LOC_Os05g05200 LOC_Os12g35030 LOC_Os08g06070 LOC_Os12g43600 LOC_Os06g19680 LOC_Os07g22840 LOC_Os12g01190 LOC_Os07g20150 LOC_Os04g53720 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Metacyc Pathways | PWY-5041 METHIONINE-DEG1-PWY |
| Reference | |
|---|---|
| PubMed | 20171579 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g46450.1 |
| Rice Genome Annotation | LOC_Os04g46450.1 |
| Ricechip | LOC_Os04g46450.1 |
| KEGG | osa:4336589 dosa:Os04t0550400-01 |
| Entrez-Gene | 4336589 |