RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g51630.3 View Network Show in Genome Browser |
| Other Names | Os04g0605900 |
| Description | 60S ribosomal protein L7, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 30599970-30602354 Nucleotide Length: 519 |
| Protein-coding | LOC_Os04g51630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01560 LOC_Os03g58430 LOC_Os01g25610 LOC_Os01g19840 LOC_Os03g04750 LOC_Os03g38000 LOC_Os03g21940 LOC_Os03g59310 LOC_Os04g42380 LOC_Os03g10340 LOC_Os02g14059 More.. |
| Downstream Genes | LOC_Os05g30530 LOC_Os07g08660 LOC_Os05g28750 LOC_Os10g32820 LOC_Os12g38000 LOC_Os07g42950 LOC_Os05g48310 LOC_Os12g41400 LOC_Os12g07740 LOC_Os05g11710 LOC_Os09g08430 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1875 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g51630.3 |
| Rice Genome Annotation | LOC_Os04g51630.3 |
| Ricechip | LOC_Os04g51630.3 |
| KEGG | osa:4336914 dosa:Os04t0605900-01 |
| Entrez-Gene | 4336914 |