RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g54340.1 View Network Show in Genome Browser |
| Other Names | Os04g0635900 |
| Description | double-strand break repair protein MRE11, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 32342580-32348446 Nucleotide Length: 2118 |
| Protein-coding | LOC_Os04g54340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g29464 LOC_Os03g54091 LOC_Os02g10060 LOC_Os01g01689 LOC_Os04g49860 LOC_Os02g53680 LOC_Os04g51700 LOC_Os03g06900 LOC_Os03g58530 LOC_Os01g49690 LOC_Os02g04050 More.. |
| Downstream Genes | LOC_Os09g21770 LOC_Os11g48090 LOC_Os07g08729 LOC_Os07g30980 LOC_Os06g14190 LOC_Os08g32620 LOC_Os11g40150 LOC_Os05g46270 LOC_Os12g31370 LOC_Os07g33340 LOC_Os07g08880 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g54340.1 |
| Rice Genome Annotation | LOC_Os04g54340.1 |
| Ricechip | LOC_Os04g54340.1 |
| KEGG | osa:4337137 dosa:Os04t0635900-01 |
| Entrez-Gene | 4337137 |