RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g55500.1 View Network Show in Genome Browser |
| Other Names | Os04g0648700 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 33006324-33013002 Nucleotide Length: 1953 |
| Protein-coding | LOC_Os04g55500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71960 LOC_Os04g08340 LOC_Os01g51380 LOC_Os01g49190 LOC_Os02g07870 |
| Downstream Genes | LOC_Os08g44260 LOC_Os09g08910 LOC_Os09g38440 LOC_Os06g37180 LOC_Os05g47980 LOC_Os06g45120 LOC_Os06g49800 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g55500.1 |
| Rice Genome Annotation | LOC_Os04g55500.1 |
| Ricechip | LOC_Os04g55500.1 |
| KEGG | osa:4337213 dosa:Os04t0648700-01 |
| Entrez-Gene | 4337213 |