RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g23950.1 View Network Show in Genome Browser |
| Other Names | Os05g0305200 |
| Description | TRAF-type zinc finger family protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 13783219-13785460 Nucleotide Length: 1005 |
| Protein-coding | LOC_Os05g23950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g12680 LOC_Os01g63780 LOC_Os03g63430 LOC_Os03g18690 LOC_Os03g07430 LOC_Os01g12720 LOC_Os03g17700 LOC_Os05g14860 LOC_Os02g19140 LOC_Os03g02260 LOC_Os03g22900 More.. |
| Downstream Genes | LOC_Os08g33880 LOC_Os12g22620 LOC_Os10g26520 LOC_Os12g30540 LOC_Os07g49150 LOC_Os11g36470 LOC_Os06g06090 LOC_Os07g06950 LOC_Os06g20610 LOC_Os08g12820 LOC_Os11g14220 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-5132 PWY-5133 PWY-5365 PWY-5123 POLYISOPRENSYN-PWY PWY-5121 PWY-5122 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g23950.1 |
| Rice Genome Annotation | LOC_Os05g23950.1 |
| Ricechip | LOC_Os05g23950.1 |
| KEGG | osa:9271601 dosa:Os05t0305200-01 |
| Entrez-Gene | 9271601 |