RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g34180.1 View Network Show in Genome Browser |
| Other Names | Os05g0413400 |
| Description | hydrolase, NUDIX family, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 20210321-20213587 Nucleotide Length: 882 |
| Protein-coding | LOC_Os05g34180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56210 LOC_Os05g11870 LOC_Os03g59580 LOC_Os02g01920 LOC_Os02g50130 LOC_Os02g32060 LOC_Os04g32740 LOC_Os04g58640 LOC_Os04g46280 LOC_Os02g13350 LOC_Os01g44130 More.. |
| Downstream Genes | LOC_Os06g14420 LOC_Os08g28840 LOC_Os09g15340 LOC_Os08g28860 LOC_Os07g11120 LOC_Os11g32750 LOC_Os06g04910 LOC_Os12g10850 LOC_Os06g42790 LOC_Os12g10910 LOC_Os05g49200 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-922 NONMEVIPP-PWY POLYISOPRENSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g34180.1 |
| Rice Genome Annotation | LOC_Os05g34180.1 |
| Ricechip | LOC_Os05g34180.1 |
| KEGG | osa:4338791 dosa:Os05t0413400-01 |
| Entrez-Gene | 4338791 |