RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g48422.1 View Network Show in Genome Browser |
| Other Names | Os05g0558000 |
| Description | 60S ribosomal protein-related, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27764857-27766660 Nucleotide Length: 1248 |
| Protein-coding | LOC_Os05g48422 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g43140 LOC_Os05g05220 LOC_Os04g50660 LOC_Os03g49210 LOC_Os03g51900 LOC_Os02g49270 LOC_Os05g41100 LOC_Os03g06190 LOC_Os01g33030 LOC_Os03g61560 LOC_Os03g22740 More.. |
| Downstream Genes | LOC_Os10g35280 LOC_Os06g30320 LOC_Os07g29320 LOC_Os07g47580 LOC_Os07g10350 LOC_Os07g33340 LOC_Os05g49230 LOC_Os12g04010 LOC_Os07g20580 LOC_Os11g04200 LOC_Os08g31810 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g48422.1 |
| Rice Genome Annotation | LOC_Os05g48422.1 |
| Ricechip | LOC_Os05g48422.1 |
| KEGG | osa:4339582 dosa:Os05t0558000-01 |
| Entrez-Gene | 4339582 |