RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g04580.1 View Network Show in Genome Browser |
| Other Names | Os06g0137300 |
| Description | transcription factor TFIIF, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 1990029-1993736 Nucleotide Length: 951 |
| Protein-coding | LOC_Os06g04580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g46330 LOC_Os04g01130 LOC_Os03g04980 LOC_Os02g15220 LOC_Os01g62040 LOC_Os02g49190 LOC_Os03g53190 LOC_Os03g06670 LOC_Os01g73310 LOC_Os05g01600 LOC_Os02g26440 More.. |
| Downstream Genes | LOC_Os07g43360 LOC_Os09g11270 LOC_Os08g25130 LOC_Os11g34300 LOC_Os08g09320 LOC_Os06g08770 LOC_Os07g08170 LOC_Os07g45064 LOC_Os08g01620 LOC_Os10g28230 LOC_Os08g04280 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1424 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g04580.1 |
| Rice Genome Annotation | LOC_Os06g04580.1 |
| Ricechip | LOC_Os06g04580.1 |
| KEGG | osa:4340047 dosa:Os06t0137300-01 |
| Entrez-Gene | 4340047 |