RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g06980.1 View Network Show in Genome Browser |
| Other Names | Os07g0164100 |
| Description | histone deacetylase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 3435933-3444791 Nucleotide Length: 1872 |
| Protein-coding | LOC_Os07g06980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g38470 LOC_Os02g12380 LOC_Os02g12350 LOC_Os05g51550 LOC_Os03g50430 LOC_Os02g10920 LOC_Os01g59980 LOC_Os01g07070 LOC_Os04g41470 LOC_Os01g18100 LOC_Os05g46780 More.. |
| Downstream Genes | LOC_Os09g12800 LOC_Os08g41010 LOC_Os12g22620 LOC_Os08g08000 LOC_Os12g07950 LOC_Os08g25570 LOC_Os10g42950 LOC_Os08g25200 LOC_Os08g13930 LOC_Os10g22450 LOC_Os07g09190 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g06980.1 |
| Rice Genome Annotation | LOC_Os07g06980.1 |
| Ricechip | LOC_Os07g06980.1 |
| KEGG | osa:4342472 dosa:Os07t0164100-01 |
| Entrez-Gene | 4342472 |