RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g08330.1 View Network Show in Genome Browser |
| Other Names | Os07g0180900 |
| Description | ribosomal protein L4, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 4263172-4265798 Nucleotide Length: 1218 |
| Protein-coding | LOC_Os07g08330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os01g49290 LOC_Os01g67134 LOC_Os03g08440 LOC_Os05g08360 LOC_Os03g22180 LOC_Os02g27760 LOC_Os01g54870 LOC_Os03g21940 More.. |
| Downstream Genes | LOC_Os08g03640 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g06750 LOC_Os12g07010 LOC_Os07g42450 LOC_Os12g38000 LOC_Os11g11390 LOC_Os11g03400 LOC_Os09g32976 LOC_Os08g23710 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g08330.1 |
| Rice Genome Annotation | LOC_Os07g08330.1 |
| Ricechip | LOC_Os07g08330.1 |
| KEGG | osa:4342563 dosa:Os07t0180900-01 |
| Entrez-Gene | 4342563 |