RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g40580.1 View Network Show in Genome Browser |
| Other Names | Os07g0597000 |
| Description | eukaryotic translation initiation factor 5A, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 24317580-24320974 Nucleotide Length: 483 |
| Protein-coding | LOC_Os07g40580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g34770 LOC_Os03g29170 LOC_Os05g26660 LOC_Os03g08440 LOC_Os01g24690 LOC_Os02g32120 LOC_Os01g04260 LOC_Os03g37970 LOC_Os03g02710 LOC_Os02g32490 LOC_Os06g02510 More.. |
| Downstream Genes | LOC_Os12g43670 LOC_Os08g43170 LOC_Os09g07830 LOC_Os11g26850 LOC_Os09g34960 LOC_Os10g37420 LOC_Os07g42450 LOC_Os09g02700 LOC_Os12g32240 LOC_Os11g32240 LOC_Os09g15770 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g40580.1 |
| Rice Genome Annotation | LOC_Os07g40580.1 |
| Ricechip | LOC_Os07g40580.1 |
| KEGG | osa:4343796 dosa:Os07t0597000-01 |
| Entrez-Gene | 4343796 |