RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g01100.1 View Network Show in Genome Browser |
| Other Names | Os08g0101100 |
| Description | HMG1/2, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 71343-72715 Nucleotide Length: 612 |
| Protein-coding | LOC_Os08g01100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11600 LOC_Os07g06620 LOC_Os07g36140 LOC_Os07g27450 |
| Downstream Genes | LOC_Os09g37250 LOC_Os12g34510 LOC_Os08g33100 LOC_Os08g40180 LOC_Os10g41450 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g01100.1 |
| Rice Genome Annotation | LOC_Os08g01100.1 |
| Ricechip | LOC_Os08g01100.1 |
| KEGG | osa:4344416 dosa:Os08t0101100-01 |
| Entrez-Gene | 4344416 |