RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g08040.1 View Network Show in Genome Browser |
| Other Names | Os08g0177700 |
| Description | LSM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 4562428-4565405 Nucleotide Length: 297 |
| Protein-coding | LOC_Os08g08040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g36810 LOC_Os05g32310 LOC_Os01g15310 LOC_Os02g30624 LOC_Os02g01250 LOC_Os03g13760 LOC_Os04g31950 LOC_Os02g03440 LOC_Os02g42860 LOC_Os08g05530 LOC_Os04g39444 More.. |
| Downstream Genes | LOC_Os11g43620 LOC_Os10g35990 LOC_Os10g34520 LOC_Os10g35550 LOC_Os11g20689 LOC_Os09g07500 LOC_Os08g23810 LOC_Os10g10434 LOC_Os09g17850 LOC_Os08g44520 LOC_Os10g03540 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g08040.1 |
| Rice Genome Annotation | LOC_Os08g08040.1 |
| Ricechip | LOC_Os08g08040.1 |
| KEGG | osa:4344803 dosa:Os08t0177700-01 |
| Entrez-Gene | 4344803 |