RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42730.1 View Network Show in Genome Browser |
| Other Names | Os08g0540100 |
| Description | radical SAM enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27034929-27038859 Nucleotide Length: 1146 |
| Protein-coding | LOC_Os08g42730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02560 LOC_Os01g09460 LOC_Os01g53450 LOC_Os08g14770 LOC_Os04g40840 LOC_Os01g56310 LOC_Os05g43576 LOC_Os05g09500 LOC_Os03g56390 LOC_Os04g38330 LOC_Os04g35480 More.. |
| Downstream Genes | LOC_Os09g38030 LOC_Os10g41150 LOC_Os10g11140 LOC_Os12g17070 LOC_Os11g38030 LOC_Os12g32230 LOC_Os10g41930 LOC_Os12g15420 LOC_Os09g27420 LOC_Os11g05394 LOC_Os12g32640 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00780 rn01100 |
| Metacyc Pathways | PWY-3701 BIOTIN-SYNTHESIS-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42730.1 |
| Rice Genome Annotation | LOC_Os08g42730.1 |
| Ricechip | LOC_Os08g42730.1 |
| KEGG | osa:4346185 dosa:Os08t0540100-01 |
| Entrez-Gene | 4346185 |