RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g29190.2 View Network Show in Genome Browser |
| Other Names | Os11g0482000 |
| Description | 40S ribosomal protein S5, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 16917660-16919756 Nucleotide Length: 600 |
| Protein-coding | LOC_Os11g29190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14059 LOC_Os04g28180 LOC_Os05g30530 LOC_Os05g11710 LOC_Os03g59310 LOC_Os06g35730 LOC_Os04g50990 LOC_Os01g10820 LOC_Os02g47140 LOC_Os01g54870 LOC_Os03g22180 More.. |
| Downstream Genes | LOC_Os12g38000 LOC_Os12g21798 LOC_Os12g03880 LOC_Os12g03090 LOC_Os12g07010 LOC_Os11g38959 LOC_Os12g05430 LOC_Os11g43900 LOC_Os12g42180 LOC_Os12g33240 LOC_Os12g01710 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g29190.2 |
| Rice Genome Annotation | LOC_Os11g29190.2 |
| Ricechip | LOC_Os11g29190.2 |
| KEGG | osa:4350516 dosa:Os11t0482000-01 |
| Entrez-Gene | 4350516 |