RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g09000.1 View Network Show in Genome Browser |
| Other Names | Os12g0192500 |
| Description | phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 4706847-4711336 Nucleotide Length: 1647 |
| Protein-coding | LOC_Os12g09000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g39630 LOC_Os08g33082 LOC_Os05g06760 LOC_Os04g51700 LOC_Os06g29844 LOC_Os02g30840 LOC_Os03g47610 LOC_Os05g39310 LOC_Os05g39320 LOC_Os03g18220 LOC_Os02g10070 More.. |
| Downstream Genes | LOC_Os12g17080 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00730 rn01100 |
| Metacyc Pathways | THISYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g09000.1 |
| Rice Genome Annotation | LOC_Os12g09000.1 |
| Ricechip | LOC_Os12g09000.1 |
| KEGG | osa:4351707 dosa:Os12t0192500-02 |
| Entrez-Gene | 4351707 |