RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g39070.1 View Network Show in Genome Browser |
| Other Names | Os12g0580300 |
| Description | TATA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 24031375-24035275 Nucleotide Length: 792 |
| Protein-coding | LOC_Os12g39070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23630 LOC_Os05g23940 LOC_Os09g36440 LOC_Os06g44030 LOC_Os09g26180 LOC_Os05g01710 LOC_Os01g63940 LOC_Os03g29470 LOC_Os01g32750 LOC_Os02g06592 LOC_Os06g08770 More.. |
| Downstream Genes | LOC_Os12g43370 LOC_Os12g42760 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5542 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g39070.1 |
| Rice Genome Annotation | LOC_Os12g39070.1 |
| Ricechip | LOC_Os12g39070.1 |
| KEGG | osa:4352633 dosa:Os12t0580300-01 |
| Entrez-Gene | 4352633 |