SoyOD

—Soybean Omics Database

An integrated omics database for soybean germplasm and molecular breeding

E.g. SHX852B , Zhong_Huang_13_T2T , Glyma.12G070400 , Plant height , Chr18:1000000-2000000

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Genome

Assembly genome Gene browser Gene search Transcription factor Transposable element Homologous gene

Transcriptome

Tissue expression Seed development subregions Tissue expression in germplasm Seed development in germplasm Abiotic stress Biotic stress Nutrient absorption Co-expression

Phenome

Germplasm search Germplasm distribution Plant morphology Biochemistry Plant growth Yield related Abiotic stress Biotic stress

Population

Population info Population structure Selective sweep

Variome

SNP search InDel search GWAS

Synteny

SynVisio Genome synteny

Toolkits

Jbrowse BLAST Soy-Version converter Seq extraction Heatmap Diversity Haplotype

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Genome Transcriptome TF/TE GO/KEGG Population Variation Phenome

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ID	Chromosome	Position	-log₁₀(pvalue)	Variation Type	Allele	Related Gene