SoyOD

SoyOD

—Soybean Omics Database

An integrated omics database for soybean germplasm and molecular breeding

E.g. SHX852B , Zhong_Huang_13_T2T , Glyma.12G070400 , Plant height , Chr18:1000000-2000000

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Genome

Assembly genome Gene browser Gene search Transcription factor Transposable element Homologous gene

Transcriptome

Tissue expression Seed development subregions Tissue expression in germplasm Seed development in germplasm Abiotic stress Biotic stress Nutrient absorption Co-expression

Phenome

Germplasm search Germplasm distribution Plant morphology Biochemistry Plant growth Yield related Abiotic stress Biotic stress

Population

Population info Population structure Selective sweep

Variome

SNP search InDel search GWAS

Synteny

SynVisio Genome synteny

Toolkits

Jbrowse BLAST Soy-Version converter Seq extraction Heatmap Diversity Haplotype

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Genome Transcriptome TF/TE GO/KEGG Population Variation Phenome

About

Selection assembly genome

T2T assembly:

Williams82_T2T

Zhong_Huang_13_T2T

Zhong_Huang_13_T2T-2

Jack_T2T

Yundou1_T2T

Yesheng71_T2T

Improved cultivar:

Williams82.a2.v1

Williams82.a4.v1

Zhong_Huang_13.v1

Zhong_Huang_13.v2

Amsoy

Dong_Nong_50

Embrapa_BRS537

FiskebyIII (PI 438471)

Han_Dou_5

He_Feng_25

Hei_He_43

Hua_Xia_3

Hwangkeum

Ji_Dou_17

Jin_Dou_23

Jing_Yuan

Ju_Xuan23

Ke_Shan_1

Lee_v2 (PI 548656)

PI548362

Qi_Huang_34

Tian_Long_1

Tie_Feng_18

Wan_Dou_28

Wen_Feng_7

Williams82.a1.v1

Xu_Dou_1

Yu_Dou_22

Zhong_Huang_35

Landrace:

Zhutwinning2

Zi_Hua_4

Tong_Shan_Tian_E_Dan

58-161

Shi_Sheng_Chang_Ye

PI398296

Feng_Di_Huang

Tie_Jia_Si_Li_Huang

Chang_Chun_Man_Cang_Jin

Glycine soja :

GsojaF

PI483463

PI549046

PI562565

PI578357

W05

Perennial Glycine :

Glycine_cyrtoloba

Glycine_dolichocarpa

Glycine_falcata

Glycine_stenophita

Glycine_syndetika

Glycine_tomentella_D3

Genome data

Gene ID	Chromosome	Start	End	Strand	Description

Funded by the NSFC. Developed by the College of Life Sciences, Zhejiang University.
Huixia Shou Lab. and Ming Chen Lab. All Rights Reserved.