SoyOD

SoyOD

—Soybean Omics Database

An integrated omics database for soybean germplasm and molecular breeding

E.g. SHX852B , Zhong_Huang_13_T2T , Glyma.12G070400 , Plant height , Chr18:1000000-2000000

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Genome

Assembly genome Gene browse Gene search Transcription factor Transposable element Homologous gene

Transcriptome

Tissue expression Seed development subregions Tissue expression in germplasm Seed development in germplasm Abiotic stress Biotic stress Nutrient absorption Co-expression

Phenome

Germplasm search Germplasm distribution Plant architecture Biochemistry Plant growth and development Yield related Abiotic stress Biotic stress

Population

Population info Population structure Population selection

Variome

SNP search InDel search GWAS

Synteny

SynVisio Genome variation synteny

Toolkits

Jbrowse Blast Soy-Version convert Seq extraction Heatmap Diversity Haplotype

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Genome Transcriptome TF/TE GO/KEGG Population Variation Phenome

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Browse TF counts

Select a Genome

Williams_82_T2T

Zhong_Huang_13_T2T

Williams_82.a2.v1

Williams_82.a4.v1

Zhong_Huang_13.v2

Amsoy

Zhutwinning2

Dong_Nong_50

Embrapa_BRS537

Zi_Hua_4

FiskebyIII (PI 438471)

Glycine_cyrtoloba

Glycine_dolichocarpa

Glycine_falcata

Glycine_stenophita

Glycine_syndetika

Glycine_tomentella_D3

GsojaF

Han_Dou_5

He_Feng_25

Hei_He_43

Hua_Xia_3

Hwangkeum

Ji_Dou_17

Jin_Dou_23

Jing_Yuan

Ju_Xuan23

Ke_Shan_1

Lee_v2 (PI 548656)

Tong_Shan_Tian_E_Dan

PI483463

PI548362

PI549046

PI562565

PI578357

58-161

Qi_Huang_34

PI398296

Tian_Long_1

Tie_Feng_18

Chang_Chun_Man_Cang_Jin

Feng_Di_Huang

W05

Wan_Dou_28

Wen_Feng_7

Williams_82.a1.v1

Xu_Dou_1

Yu_Dou_22

Zhong_Huang_13.v1

Zhong_Huang_35

Tie_Jia_Si_Li_Huang

Shi_Sheng_Chang_Ye

Jack_T2T

Yundou1_T2T

Yesheng71_T2T

Browse in TF family

TF table

Detailed description

TF details

GeneID	Type	Assembly	Description

Funded by the NSFC. Developed by the College of Life Sciences, Zhejiang University.
Huixia Shou lab and Ming Chen Lab. All Rights Reserved.