SoyOD

SoyOD

—Soybean Omics Database

An integrated omics database for soybean germplasm and molecular breeding

E.g. SHX852B , Zhong_Huang_13_T2T , Glyma.12G070400 , Plant height , Chr18:1000000-2000000

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Genome

Assembly genome Gene browse Gene search Transcription factor Transposable element Homologous gene

Transcriptome

Tissue expression Seed development subregions Tissue expression in germplasm Seed development in germplasm Abiotic stress Biotic stress Nutrient absorption Co-expression

Phenome

Germplasm search Germplasm distribution Plant architecture Biochemistry Plant growth and development Yield related Abiotic stress Biotic stress

Population

Population info Population structure Population selection

Variome

SNP search InDel search GWAS

Synteny

SynVisio Genome variation synteny

Toolkits

Jbrowse Blast Soy-Version convert Seq extraction Heatmap Diversity Haplotype

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Genome Transcriptome TF/TE GO/KEGG Population Variation Phenome

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Browse TF counts

Select a Genome

RAV

FAR1

NAC

bZIP

HSF

bHLH

Dof

ZF-HD

YABBY

Whirly

WRKY

TCP

SBP

GATA

GRAS

Trihelix

LBD

BES1

Nin-like

SRS

E2F/DP

CPP

NF-YB

NF-YC

NF-YA

EIL

SAP

LFY

S1Fa-like

GeBP

BBR-BPC

CAMTA

VOZ

NF-X1

HRT-like

STAT

ARF

B3

AP2

ERF

DBB

CO-like

ARR-B

G2-like

MIKC_MADS

M-type_MADS

GRF

HB-other

WOX

TALE

HD-ZIP

HB-PHD

C3H

C2H2

LSD

MYB

MYB_related

NZZ/SPL

Browse in Assembly

TF table

Detailed description

TF details

GeneID	Type	Assembly	Description

Funded by the NSFC. Developed by the College of Life Sciences, Zhejiang University.
Huixia Shou lab and Ming Chen Lab. All Rights Reserved.